Numerous updates to project documentation

doc/doxyfile

@@ -535,7 +535,7 @@ HIDE_COMPOUND_REFERENCE= NO
 # the files that are included by a file in the documentation of that file.
 # The default value is: YES.
 
-SHOW_INCLUDE_FILES     = YES
+SHOW_INCLUDE_FILES     = NO
 
 # If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
 # grouped member an include statement to the documentation, telling the reader
@@ -778,10 +778,12 @@ WARN_LOGFILE           =
 INPUT                  = main.dox \
                          toolkit-usage.dox \
                          toolkit-examples.dox \
+                         toolkit-files.dox \
+                         input-file.dox \
+                         toolkit-units.dox \
                          modules.dox \
-                         ../include/epanet2_2.h \
                          ../include/epanet2_enums.h \
-                         output-format.dox
+                         ../include/epanet2_2.h
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -1647,7 +1649,7 @@ EXTRA_SEARCH_MAPPINGS  =
 # If the GENERATE_LATEX tag is set to YES, doxygen will generate LaTeX output.
 # The default value is: YES.
 
-GENERATE_LATEX         = yes
+GENERATE_LATEX         = NO
 
 # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. If a
 # relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
@@ -1690,7 +1692,7 @@ COMPACT_LATEX          = NO
 # The default value is: a4.
 # This tag requires that the tag GENERATE_LATEX is set to YES.
 
-PAPER_TYPE             = a4
+PAPER_TYPE             = letter
 
 # The EXTRA_PACKAGES tag can be used to specify one or more LaTeX package names
 # that should be included in the LaTeX output. The package can be specified just
@@ -1774,7 +1776,7 @@ USE_PDFLATEX           = YES
 # The default value is: NO.
 # This tag requires that the tag GENERATE_LATEX is set to YES.
 
-LATEX_BATCHMODE        = NO
+LATEX_BATCHMODE        = YES
 
 # If the LATEX_HIDE_INDICES tag is set to YES then doxygen will not include the
 # index chapters (such as File Index, Compound Index, etc.) in the output.